Genetic Engineering of Autologous Vein Grafts with thrombomodulin-Expressing Vectors to Resist thrombosis, Neointimal Hyperplasia and Atherosclerosis
Generated by an autonomous AI research agent — Anthropic Claude Opus 4.7 or OpenAI GPT-5.5, max reasoning effort. Sources cited inline. Full disclosure at /methodology/jhtv-deep-dive.
Indication
vascular graft thrombosis / atherosclerosis (cardiovascular)
Modality
Gene Therapy
Mechanism
thrombomodulin gene therapy (vein graft)
Target
thrombomodulin
rNPV Envelope
Low
-$43.1M
costs +25% · peak −25%
Base
-$34.2M
cumulative PoS 0.5%
High
-$25.4M
costs −25% · peak +25%
This is an explicitly hypothetical, conservative illustrative profile shown for cohort consistency only — the asset is a 1999 academic disclosure (Case C03579) with no remaining composition-of-matter exclusivity and a category precedent (PREVENT III/IV) that failed Phase 3. Costs follow gene/cell-therapy preclinical and biologic mid-stage norms, with an orphan-sized late stage because a registrational vein-graft trial is a large multicenter angiographic-endpoint study (PREVENT IV enrolled 3,014). PoS values are deliberately depressed below BIO/QLS gene-therapy medians at Phase 2 and Phase 3 because the only clinically tested same-modality category (ex-vivo graft modification) has a definitive negative Phase 3 readout and the asset's own source data show no neointima benefit — these are folded directly into the final pos, not deferred to a multiplier.
Composite score breakdown
Locked rubric — 40/30/30 weights
Clinical relevance · 40%
0.60
Modality fit · 30%
0.74
Whitespace · 30%
0.50
Composite 0.612 — composite-score rank #21 of 50 top-tier inventions in the jhtv-portfolio@2026-Q2 cohort. The page header uses rNPV rank (#23) to match the index ordering.
Comparators
Real programs anchoring the engine inputs
Edifoligide (E2F decoy oligonucleotide) — PREVENT IV, coronary artery bypass (Corgentech/Bristol-Myers Squibb)
The single most relevant comparator: the most clinically advanced ex-vivo gene/oligonucleotide-modified autologous vein-graft therapy ever run — identical delivery paradigm (a one-time intraoperative ex-vivo treatment of the harvested vein before grafting). PREVENT IV (3,014 CABG patients) showed angiographic vein-graft failure was essentially identical between edifoligide and placebo, with a small but significant excess of cerebrovascular events and pulmonary embolism in the treated arm. This is the definitive, completed, negative Phase 3 precedent for the entire ex-vivo-modified-vein-graft category and is the first fact a cardiology CMO raises. Cautionary precedent only — program discontinued; never a live anchor.
Criteria 2 and 4: same indication (vein-graft failure prophylaxis) and the same ex-vivo intraoperative-graft-treatment modality with the most advanced clinical readout in the category — a failed pivotal Phase 3. Status: DISCONTINUED after PREVENT IV; cautionary precedent, not a live anchor.
Edifoligide (E2F decoy oligonucleotide) — PREVENT III, infrainguinal (peripheral) bypass (Corgentech)
Companion pivotal trial in the peripheral lower-extremity bypass setting: 1,404 critical-limb-ischemia patients given a single intraoperative ex-vivo edifoligide or placebo graft treatment. Ex-vivo edifoligide did not confer protection from reintervention for graft failure. Together with PREVENT IV this establishes that the ex-vivo-gene/oligo-modified vein-graft strategy failed Phase 3 in BOTH the coronary and peripheral settings — the two indications a thrombomodulin-graft asset would target. Cautionary precedent only; program discontinued.
Criteria 2 and 4: same indication family (peripheral vein-graft failure prophylaxis) and same ex-vivo graft-treatment modality, failed Phase 3. Status: DISCONTINUED after PREVENT III; cautionary precedent.
Adenoviral / non-viral thrombomodulin (TM) vein-graft gene transfer — Johns Hopkins preclinical program (the asset's own source work)
The asset's own underlying science. The Hopkins group (Kim, Sperry, Kolodgie et al., Circulation Research 2002) showed TM expression falls >95% in the first two weeks after graft implantation and that adenoviral-mediated TM restoration enhanced protein-C activation and reduced bound thrombin activity — BUT explicitly found that neointima formation was NOT affected. This is a same-target, same-modality archetype anchor for cost/duration only; it is preclinical (rabbit) and is itself the evidentiary basis for the mechanism caveat below, not a commercial comparator.
Criteria 1: same molecular target (thrombomodulin) and same modality (adenoviral graft gene transfer). Archetype anchor for stage cost/duration and the source of the mechanism-vs-title caveat — preclinical, never advanced clinically.
Stage profile
Asset-specific cost, duration, and PoS by stage
| Stage | Cost | Duration | PoS | Citations |
|---|---|---|---|---|
| Preclinical | $18.0M | 24 mo | 30.0% | [0] [1] [2] |
| Phase I | $45.0M | 18 mo | 55.0% | [2] [3] |
| Phase II | $95.0M | 30 mo | 22.0% | [0] [1] [4] |
| Phase III | $220.0M | 42 mo | 18.0% | [0] [1] |
| NDA/BLA Review | $14.0M | 12 mo | 70.0% | [0] [1] |
Multiplier handling: No multipliers eligible for this asset under the locked methodology. See methodology for the rule.
Peak revenue and discount rate
$150.0M peak · WACC 16.0%
Peak revenue. Peak revenue is shown only for cohort-consistency of the rNPV envelope and is NOT the decision criterion for this asset. A successful one-time ex-vivo graft pretreatment is a per-procedure adjunct (single-administration, no chronic dosing), and the most directly analogous program, edifoligide, was developed for this exact use case and never reached the market because it failed Phase 3 — so there is no real launched comparator to anchor a peak. The $150M figure is a deliberately conservative hypothetical per-procedure-adjunct ceiling against US/EU CABG and peripheral-bypass volumes at modest device-adjunct-like pricing; it is illustrative, not a forecast, consistent with the grant_non_commercial classification.
WACC. A 16% rate reflects elevated risk above a standard biologic (12–13%): a transient adenoviral ex-vivo modality, an acquired (non-genetic) target rationale, expired underlying IP, and a directly analogous ex-vivo graft-modification category with a completed negative Phase 3 (PREVENT III/IV).
Sensitivity (tornado)
Top drivers of rNPV variance
Drivers ranked by absolute rNPV swing. The vertical tick inside each bar marks the base rNPV (-$34.2M); each bar spans the rNPV range produced by flexing one input between its low and high values. Gold = the input pushes rNPV up when increased; red = the input pushes rNPV down when increased.
Monte Carlo distribution
1,000 trials · rpNPV mode
This is a bimodal distribution by construction, not a Gaussian. Most paths terminate in clinical failure (red cluster — accumulated cost only); a minority succeed and capture full peak revenue (green tail). Bar heights are square-root-scaled so the success tail stays visible alongside the much taller failure cluster; exact counts are preserved in the percentiles below. Gold line = median (P50). Navy dashed = base rNPV (mean) — the probability-weighted expected value, which can sit above the median when the upper tail is strong enough to outweigh the failure cluster (and close to the median when it isn’t).
P5
-$128.6M
P25
-$40.7M
P50 (median)
-$17.3M
P75
-$11.2M
P95
-$6.1M
Prob ≥ 0
0.1%
Evidence register
8 per-assumption citations
| Assumption | Source | Date | Confidence |
|---|---|---|---|
Asset is a 1999 JHU disclosure (Case C03579); adenoviral ex-vivo/in-vivo vein-graft TM gene transfer; no patent numbers disclosed cmo_findings.asset_class_reality | JHU Technology Ventures — Genetic Engineering of Autologous Vein Grafts with Thrombomodulin-Expressing Vectors (Technology 16164 / Case C03579) company_filing | 2014-10-07 | high |
Own Hopkins source data: TM restoration reduces thrombin activity but does NOT affect neointima formation (contradicts title's hyperplasia/atherosclerosis claim) stage_profile.phase_2.pos | Early loss of thrombomodulin expression impairs vein graft thromboresistance: implications for vein graft failure (Kim/Sperry/Kolodgie et al., Circulation Research 2002) peer_review | 2002-02-08 | high |
PREVENT IV — ex-vivo gene/oligo graft modification (edifoligide) failed Phase 3 in CABG; category-level negative precedent comparators[0] | Efficacy and safety of edifoligide for prevention of vein graft failure following CABG: PREVENT IV randomized controlled trial (Alexander et al., JAMA 2005) trial_disclosure | 2005-11-16 | high |
PREVENT III — same ex-vivo graft-modification approach also failed Phase 3 in peripheral bypass comparators[1] | Results of PREVENT III: a multicenter, randomized trial of edifoligide for the prevention of vein graft failure in lower extremity bypass surgery (Conte et al., J Vasc Surg 2006) trial_disclosure | 2006-04-01 | high |
PREVENT IV 5-year outcomes confirm durable lack of clinical benefit (modality de-risked, not merely an endpoint miss) stage_profile.phase_3.pos | Edifoligide and Long-Term Outcomes After Coronary Artery Bypass Grafting: PREVENT IV 5-Year Results (Lopes et al., Am Heart J 2012) peer_review | 2012-09-01 | high |
PREVENT IV trial registration (independent corroboration of the pivotal ex-vivo graft-treatment design and scale) stage_profile.phase_3.cost_usd_m | Prevention of Autogenous Vein Graft Failure in Coronary Artery Bypass Procedures (PREVENT IV, NCT00042081) trial_disclosure | 2002-07-22 | high |
Field review: ex-vivo gene therapy for vein-graft disease remains promising-but-unproven with no approved product after the PREVENT failures funding_path_archetype | Vein graft failure: current clinical practice and potential for gene therapeutics (de Vries et al., Gene Therapy 2012) peer_review | 2012-03-29 | high |
Adenoviral vein-graft gene transfer gives transient expression and TGF-beta/inflammatory drivers, not durable correction (vector-durability caveat) wacc_suggestion | Inhibition of Transforming Growth Factor-β Restores Endothelial Thromboresistance in Vein Grafts (Sho/Sperry et al., Am J Pathol / PMC3188354) peer_review | 2005-09-01 | medium |
Thesis
Why this asset earns its rank
This asset is a 1999 Johns Hopkins disclosure (Case C03579, report date July 1999) describing adenoviral ex-vivo/in-vivo gene transfer of thrombomodulin into autologous vein grafts to resist the three temporal failure modes of bypass conduits — acute thrombotic occlusion, subacute neointimal hyperplasia, and late atherosclerosis. The underlying biology is real and elegant: the Hopkins group showed thrombomodulin expression collapses >95% in the first two weeks after a vein is grafted into the arterial circulation, removing a key endothelial anticoagulant exactly when the conduit is most thrombogenic. It is classified grant_non_commercial: it is a genuine therapeutic concept, not a research tool, but it is a quarter-century-old disclosure with no disclosed patents (any utility filing from ~1999 has long since expired) and — critically — the inventors' own Circulation Research 2002 data show TM restoration reduced bound thrombin activity but did NOT affect neointima formation, directly undercutting two of the three benefits in the patent title.
There is no live commercial comparator to anchor a forecast because the most clinically advanced asset in this exact modality, edifoligide — a one-time ex-vivo oligonucleotide graft pretreatment — failed Phase 3 in BOTH coronary (PREVENT IV, 3,014 patients) and peripheral (PREVENT III, 1,404 patients) bypass, with no clinical benefit at 5 years and a safety signal. The economic frame is therefore not a product DCF but a cautionary-precedent frame: the registrational bar is a large multicenter angiographic-endpoint trial against a category that already failed it, on a transient adenoviral vector against an acquired, mechanotransduction-driven target. The engine result is -$43.1M to -$25.4M, with a base rNPV of -$34.2M and cumulative PoS of 0.5%; that spread is shown only for cohort consistency — the rNPV is not the decision criterion here, which is why the asset is classified grant_non_commercial, and the realistic path is academic follow-on or a non-commercial vascular-biology contribution, not standalone equity.
Verdict: a biologically interesting, historically important, but commercially non-viable disclosure. It earns its rubric rank from a strong modality_pos (gene_therapy bucket) plus the neutral 0.5 whitespace of an "other" cardiovascular indication and high IRA-exposure subscore — not from being a fundable product. The honest classification is grant_non_commercial because expired IP, a definitive negative same-modality Phase 3 precedent, and the inventors' own no-neointima-benefit data jointly eliminate the standalone-equity case while leaving residual scientific value.
Key risks
Asset-specific, not generic biotech risks
- Category already failed Phase 3: edifoligide, the most advanced ex-vivo gene/oligo-modified vein-graft therapy, missed its primary endpoint in BOTH PREVENT IV (CABG) and PREVENT III (peripheral) and showed no 5-year benefit — a definitive negative precedent for this exact modality that a cardiology CMO raises in the first minute.
- Own-data efficacy gap: the inventors' Circulation Research 2002 study found thrombomodulin restoration reduced graft thrombin activity but did NOT reduce neointima formation, so two of the three benefits asserted in the patent title (hyperplasia, atherosclerosis) are unsupported by the asset's own source data.
- IP is expired: a 1999 disclosure (Case C03579) with no disclosed patent numbers means any composition-of-matter or method exclusivity from that era has lapsed (20-year term) — there is no defensible standalone-equity IP position, which is why the asset is grant_non_commercial rather than vc_fundable.
- Vector durability vs. an acquired target: TM suppression is driven by post-graft mechanotransduction/TGF-β signaling that persists, while first-generation adenoviral expression is transient and immunogenic (adenoviral inflammation can itself drive neointima) — a single ex-vivo adenoviral dose is mechanistically mismatched to a chronic, re-suppressing target.
- Modality-bucket caveat: the pinned gene_therapy bucket overstates durability — the real construct is a transient adenoviral ex-vivo graft transfection, not a durable integrating gene therapy; the bucket is left pinned per methodology but the distinction is load-bearing for any PoS read.